I'm so smart. I just figured out some more:
Your body is just a big computer. Your organs are like multi-function programs. They communicate by measuring blood concentrations, and through the nervous system too. But I'll focus on the blood concentrations:
liver: just sits there watching the blood glucose and protein levels. If there is too much protein in the blood, it stores some. If there is too much glucose, it fills up it's own glycogen supply. If it sees a bunch of fatty acids go by, it turns them into blood sugar (or is it the muscles that do this directly?). If too much protein, and it can't hold more, then it turns the protein into sugar and ammonia.
Kidneys: too much ammonia, then filter it and put it in the bladder.
Pancrease: Just sits there looking at the blood sugar levels. If too high, it secreats a proportional amount of insulin. Some times this can make blood sugar levels rebound down.
Fat cells: Need more insulin than muscle cells to take up sugar. They can always take up some, but when the insulin and blood sugar levels get high enough, that is when they start to really take sugar and turn it into fat. They release fatty acids when they get cortisol.
Some glands: If blood sugar is too low, they release cortisol. If it gets lower, they release more cortisol. They release testosterone when they sense chemicals associated with muscle tears. They release HGH when they recieve some other signal.
Cortisol and Insulin (not testosterone) are opposites.
Muscles: They synthesis glycogen, but have a maximum speed. They do this when their glycogen stores are less than full, and there is insulin and blood sugar. They constantly tear and rebuild, releasing amino acids, and recycling a fraction of them. Atrophy sets in when there is not enough dietary protein to supplement the inefficiency in recycling, and not enough testosterone produced from lack of tears.
Testosterone is protein kind of like want insulin is to sugar.
Muscle use: they burn glycogen first. If they run out, or they need more energy than that, then they take blood sugar. If blood sugar levels drop, then you know the cortisol drill. If cortisol levels get high enough, then protein will break down everywhere and float to the liver. Sugar is burned slowly (aerobically) or fast (without oxygen). The first several units of power always come from aerobics. Anaerobics occurs when you ask for more power, and the fast twitch muscles come into play. Anearobics makes lactic acid, which makes muscles burn.
When muscles don't have glycogen, they burn either fat or blood sugar made from fat, not sure which. Fat can only be liberated from fat cells so fast. Well, you can liberate it faster, but the cortisol levels needed to liberate it that fast can make muscle break down too.
Hormones:
DHT: makes hair, sebum glands, and your dick grow. It is also needed for nerves to work propperly. It is the androgenic signal in most tissues and must be made from testosterone.
Testosterone: it is the androgenic signal in muscle cells. DHT has little effect in muscle cells. Testosterone makes you muscles grow.
Steroids: mimic testosterone. Normally testosterone rises to repair muscle tears, and then goes down again. But steroids in high doses can heal those muscle tears faster, and keep levels up 24-7 so you build muscle even long after you are not training. They also harm the rest of the body.